Unlocking the Mysteries of the Brain

introduction

I’ll keep this brief. I just finished my junior year and needless to say, it smacked me like a drum. There were PLENTY of downs, but also some ups as well, one of the biggest being that I got to pursue my own research. I did a research project on the Effects of Hypertonic Solution on Reducing Neuroinflammation Following Non-Penetrating Traumatic Brain Injury. I learned more than I ever thought I would about the brain’s intricacies and specifically its response to stress. I wanted to come into contact with this specific topic more, specifically through the lens of chemistry. In this blog, over the next few weeks, you are going to be with me throughout every step as I explore the neurochemical differences between individuals with high vs. low resilience to stress and how this can be combated along with other topics. I do hope you choose to stick around for this journey, and I hope you learn something meaningful.

-Sunny

week 1: 6/30-7/05

Day 1: 6/30/25

  • I hate this Macbook. It’s so sluggish and doesn’t respond to any of my inputs. It literally took me 30 minutes just to set up this slide. But anyway, I wanted to start off with the question I presented in the intro. What are the neurochemical differences between individuals with a high resilience to stress vs. individuals with a low resilience to stress and how can we improve stress resiliency across all brain types? To start, the resilience to stress is partly influenced by the balance of certain chemicals in the brain like cortisol, dopamine, serotonin, and norepinephrine.

    • Cortisol: High Resilience to Stress shows more balanced cortisol levels and the body takes a quicker time to return to normal cortisol levels after stress

    • Dopamine: High Resilience to Stress shows stronger, higher and a more easily activated dopamine system.

    • Serotonin: High Resilience to Stress shows stronger serotonin regulation leading to a better ability to maintain mood balance and reduce feelings of anxiety.

    • Norepinephrine: High Resilience to Norepinephrine shows stronger norepinephrine regulation, helping alertness while preventing overdrive

  • High Resilience means the brain can manage and recover from stress more effectively thanks to a balanced neurochemical system. Low resilience means that cortisol and norepinephrine stay at high levels while serotonin and dopamine systems may not be as effective at keeping the mood stable.

  • This is a strong foundation for what is to come soon.

Day 2: 7/01/25

  • I think I finally got this Macbook settled so we should be good. Now that we have a basic understanding of the chemicals that contribute to stress, let’s go deeper with each chemical to see how it specifically can be regulated to alleviate high stress levels. For the sake of condensation and the fact that I’m seeing a movie later, I’ll only talk about cortisol today. This works out as cortisol is one of the more complicated chemicals to comprehend. We know that a high resilience to stress is correlated with a balanced cortisol response. But what does that mean? A balanced cortisol response refers to the way the body releases and regulates cortisol during and after stress events. Cortisol is a crucial hormone produced by the adrenal glands, and it plays a key role in the fight-or-flight response. However, its regulation—both in terms of the amount and timing of release—is critical for maintaining health, particularly when it comes to stress resilience. It is also important that cortisol is able to return back to its normal levels quickly and that it operates on a diurnal pattern. So what can be done to regulate cortisol levels at the molecular level. There are a few things that can be done. We can block stress signals (CRH and ACTH) so the body doesn't overreact, improve the feedback loop that tells the body to stop making cortisol once it's no longer needed, prevent the production of cortisol by blocking the enzyme (11β-HSD1) that turns cortisone into active cortisol, help the body clear cortisol faster using enzymes like 5α-reductase, use natural substances like herbs and fats (e.g., ashwagandha or omega-3s) to support the body in handling stress and lowering cortisol levels. All these methods work at the molecular level to make sure your body doesn't get stuck in a "stress mode" with too much cortisol. I have to go, but I’ll go over what all this means as well as treatment options can be done for the other chemicals tomorrow.

Day 3: 7/02/25

  • Now that we have done a deep dive into cortisol, lets move on to another neurochemical, norepinephrine. Individuals with high stress resilience exhibit more balanced neurochemical regulation, particularly in how their brains manage norepinephrine (NE), a key neurotransmitter involved in the “fight or flight” response. Norepinephrine is produced mainly in the locus coeruleus and plays a critical role in arousal, attention, and responding to threats. In resilient individuals, NE levels rise quickly during acute stress but return to baseline efficiently, allowing for heightened focus without long-term disruption. Their prefrontal cortex (PFC)—responsible for executive control—effectively regulates emotional centers like the amygdala and suppresses excessive NE output, maintaining cognitive clarity. Conversely, individuals with low resilience often have dysregulated NE signaling: the locus coeruleus may remain overactive, leading to prolonged NE elevation, hypervigilance, impaired decision-making, and emotional instability. Chronic stress further weakens PFC control and disrupts feedback systems like the HPA axis, compounding NE imbalance. Improving stress resilience across brain types involves strategies that restore NE regulation and PFC function—such as mindfulness, exercise, therapy, adequate sleep, and social connection—by enhancing neuroplasticity, supporting healthy neurotransmitter cycling, and reducing excessive arousal. Overall, we can see that norepinephrine plays a key role in stress regulation and works in tandem with cortisol to operate effectively. Tomorrow, we take a dive into how dopamine works because from the research that I’ve been seeing, it is nothing like what we have just saw, and based on the title you all can tell that I’m pretty excited for this one.

Day 4: 7/03/25.

  • Ok so we have seen the impacts of norepinephrine and cortisol, now let’s take a look at dopamine. Individuals with high stress resilience differ neurochemically from those with low resilience in several key ways, with dopamine (DA) regulation playing a central role in shaping these differences. Dopamine is a neurotransmitter crucial for motivation, reward processing, goal-directed behavior, and cognitive flexibility—functions that are especially important in how we interpret and cope with stress. In stress-resilient individuals, dopamine levels in brain regions like the prefrontal cortex (PFC) and mesolimbic pathway (including the nucleus accumbens) are well-regulated, supporting a healthy balance between emotional regulation and adaptive decision-making. These individuals maintain optimal dopamine tone, meaning they can experience pleasure, stay motivated, and flexibly shift attention, even under pressure. Their PFC remains active and functional during stress, helping to suppress overactivation of the amygdala (the brain’s fear center) and modulate the hypothalamic-pituitary-adrenal (HPA) axis, which controls cortisol release. In contrast, individuals with low resilience often exhibit dopaminergic dysregulation, such as reduced baseline dopamine, blunted reward responsiveness, or hypersensitive dopamine receptors, leading to anhedonia, low motivation, poor coping strategies, and a tendency to ruminate or feel helpless during stress. Chronic stress can damage dopaminergic circuits by decreasing dopamine synthesis or receptor density, impairing cognitive flexibility and reinforcing negative behavioral loops. To improve stress resilience across different brain types, interventions should aim to restore dopamine balance and strengthen PFC function. This includes regular aerobic exercise, which naturally boosts dopamine release and receptor sensitivity, cognitive-behavioral therapy (CBT) to reframe maladaptive thought patterns, goal setting and achievement, which taps into the dopamine reward system, and practices like mindfulness and meditation, which reduce stress reactivity and enhance dopamine signaling through increased self-awareness. Nutritional support (adequate protein, omega-3s, and micronutrients like magnesium and B-vitamins), sleep hygiene, and avoiding dopamine-depleting behaviors (e.g., chronic stress, substance abuse) are also critical. Ultimately, healthy dopamine regulation allows individuals to stay engaged, optimistic, and cognitively flexible under stress—core features of psychological resilience.

Day 5: 7/04/25

  • Happy 4th! I hope you are all enjoying this time with family and friends. Lets take a look at our final neurochemical, serotonin. Serotonin, a key neurotransmitter involved in mood, emotion, and cognitive function, plays a crucial role in determining an individual's resilience to stress. It is primarily produced in the raphe nuclei of the brainstem and acts widely throughout the brain to promote feelings of well-being, emotional stability, and impulse control. Individuals with high stress resilience typically show more balanced and efficient serotonin regulation—they maintain stable serotonin levels during stress, which helps buffer against anxiety, depression, and emotional reactivity. In contrast, individuals with low resilience often have dysregulated serotonin systems, such as reduced serotonin production, impaired receptor sensitivity, or inefficient reuptake, leading to heightened vulnerability to stress-related disorders like depression and anxiety. Enhancing stress resilience across different brain types can involve interventions that support healthy serotonin function, such as regular aerobic exercise, adequate sleep, a balanced diet (especially rich in tryptophan, the precursor to serotonin), exposure to natural light, and therapeutic practices like mindfulness and cognitive-behavioral therapy. In more severe cases, selective serotonin reuptake inhibitors (SSRIs) or other medications can help stabilize serotonin signaling, promoting greater emotional regulation and stress adaptability.

Day 6: 7/05/25

  • Now that we have a stronger knowing of the four main neurochemicals related to stress regulation, lets look at how the stress can actually be regulated at the molecular level. Regulating neurochemicals at the molecular level to manage stress means influencing how certain brain chemicals—like cortisol, dopamine, serotonin, and norepinephrine—are produced, released, broken down, and how well brain cells (neurons) respond to them. Each of these neurochemicals has a specific role in the stress response, and their balance is key for emotional and physical well-being.

    • Cortisol is produced by the adrenal glands when the brain signals stress. Too much cortisol over time can damage brain areas like the hippocampus (which controls memory). Molecules called glucocorticoid receptors help regulate how cells respond to cortisol. Techniques like mindfulness, sleep, and aerobic exercise reduce cortisol by lowering activity in the hypothalamic-pituitary-adrenal (HPA) axis, the brain's stress circuit.

    • Serotonin helps regulate mood and emotional stability. It’s made from the amino acid tryptophan and is broken down by enzymes like MAO-A (monoamine oxidase A). Eating foods rich in tryptophan, getting sunlight (which triggers serotonin synthesis), and exercising can increase serotonin production and receptor sensitivity. Some medications (like SSRIs) block serotonin reuptake so more stays active between neurons.

    • Dopamine supports motivation and reward. Its production depends on tyrosine, another amino acid, and enzymes like tyrosine hydroxylase. Activities that create small wins—like setting goals or learning new things—help regulate dopamine release and receptor balance. Too little dopamine can lead to fatigue or depression, while too much can cause stress or impulsive behavior.

    • Norepinephrine increases alertness and focus during stress. It's made from dopamine in the brainstem and is regulated by the locus coeruleus. Deep breathing, regular movement, and adequate sleep reduce excessive norepinephrine signaling by calming this brain area and adjusting receptor responsiveness.

    Overall, by supporting healthy neurotransmitter function through nutrition, rest, physical activity, and stress-reducing habits, we can regulate these neurochemicals at the molecular level and improve how the brain handles stress.

week 2: 7/08-7/12

Day 7: 7/08/25

  • Welcome back people! I hope you all had a great 4th of July Weekend. I spent my time beaching in Outer Banks with my fam and just got back last night. I’m excited for this week because the topic I wanted to dive into is a little bit different, but still relatable to what I’ve been researching and something that I think we all are going to find refreshing. I’ve said before that I did a research project on the effects of hypertonic solution on reducing neuroinflammation following traumatic brain injury, and last week was a great opportunity for me to dip my toes back into research and understanding neurochemistry at the level that I did during my junior year. Because of that, I want to dedicate this summer research into continuing the research that I did my junior year but in a slightly different direction. With that, my next research question is: What role does glutamate excitotoxicity play in brain cell damage following a traumatic brain injury?

    • This might seem like its coming out of left field at first, but there is a very simple explanation. When I was doing my research my junior year, one of the terms that I kept coming across was glutamate excitotoxicity. I initially was like “Who Cares?” It didn’t really have an effect on my research and so I kept it on the backburner. However, I went back to my notes and kept seeing this term come up over and over and over again and I thought “This gotta mean something.” And after some of research that I just started, boy it really does mean something. I thought this was the perfect way to honor my project junior year while also building up and expanding. I can’t wait to share this research with you guys this week, stay tuned as always.

Day 8: 7/09/25

  • So you guys already know my research question I presented, so I wanted to take this time to elaborate further. Glutamate is the brain’s primary excitatory neurotransmitter. Under normal conditions, it's essential for synaptic transmission, learning, and memory. However, in the context of TBI, excessive glutamate release and impaired reuptake lead to a pathological process known as excitotoxicity. After a traumatic brain injury, glutamate excitotoxicity is a major secondary injury mechanism that significantly contributes to neuronal damage. It amplifies the initial mechanical insult through biochemical cascades that result in widespread cell death and functional impairments. Tomorrow, I’ll get into its mechanism of damage after TBI and some potential therapeutic remedies.

Day 9:7/10/25

  • Now that we have the intro for glutamate excitotoxicity, let’s get into its mechanism of damage after TBI and its therapeutic remedies. Glutamate excitotoxicity is a key pathological process that contributes significantly to neuronal damage following traumatic brain injury (TBI). After the initial mechanical impact of TBI, excessive amounts of glutamate—normally the brain’s primary excitatory neurotransmitter—are released into the extracellular space due to neuronal and glial damage. Compounded by impaired glutamate reuptake, this surplus overstimulates glutamate receptors, particularly NMDA and AMPA receptors, leading to an abnormal influx of calcium ions into neurons. This triggers a harmful cascade involving the activation of enzymes, mitochondrial dysfunction, oxidative stress, and ultimately, neuronal death through necrosis or apoptosis. The damage is not confined to the initial injury site, as excitotoxicity can propagate secondary injury and exacerbate long-term cognitive and functional impairments. Therapeutic strategies aimed at mitigating excitotoxicity include NMDA receptor antagonists, calcium channel blockers, antioxidants, and agents that enhance glutamate uptake or astrocyte function. Although many of these approaches have shown promise in experimental models, clinical translation remains challenging due to the complexity of TBI pathology and the need to preserve normal glutamatergic signaling.

Day 10:7/11/25

  • Okay so we know that glutamate excitotoxicity has some harmful effects. However, its properties should still be studied because they play a key role in finding solutions for the reduction of TBI. While glutamate excitotoxicity is primarily known for its harmful effects following traumatic brain injury (TBI), understanding its mechanisms offers a valuable target for therapeutic intervention to reduce brain damage. By identifying how excessive glutamate release and receptor overstimulation lead to neuronal death, researchers can develop treatments aimed at interrupting this process early in the injury cascade. For example, carefully timed administration of NMDA receptor antagonists or drugs that enhance glutamate clearance by astrocytes could prevent calcium overload and the downstream toxic events. Additionally, neuroprotective agents that stabilize mitochondrial function or reduce oxidative stress can counteract the effects of excitotoxicity. Rather than allowing the excitotoxic process to progress unchecked, using it as a therapeutic target enables clinicians to design interventions that limit secondary brain injury, preserve neural function, and improve recovery outcomes after TBI.

Day 11:7/12/25

  • I hope you all had a great week and learned something new today. After researching about glutamate excitotoxicity, I came across some really cool pieces of technology that I wanted to share with you guys. Detecting glutamate excitotoxicity in the brain, particularly after traumatic brain injury (TBI), requires advanced neuroimaging and molecular tools that can measure either the concentration of glutamate, its metabolic effects, or downstream markers of cellular stress and damage. While no single machine directly visualizes "excitotoxicity" as a process, several imaging technologies can indirectly detect its presence by measuring elevated glutamate levels, disrupted metabolism, or neuronal dysfunction. The most relevant machines include magnetic resonance spectroscopy (MRS), positron emission tomography (PET), and functional magnetic resonance imaging (fMRI), among others.

1. Magnetic Resonance Spectroscopy (MRS)

MRS is one of the most direct and non-invasive tools for measuring brain glutamate concentrations. Unlike conventional MRI, which provides structural images, MRS measures the chemical composition of brain tissue by detecting the resonance signals of specific metabolites, including glutamate, glutamine, N-acetylaspartate (NAA), and lactate. Using a modified MRI scanner equipped for spectroscopy, MRS can quantify glutamate levels in specific brain regions affected by TBI. Elevated glutamate concentrations detected by MRS are often indicative of excitotoxicity, especially when accompanied by reduced NAA, which suggests neuronal loss. However, MRS requires high field strength (3T or higher) for optimal resolution and still faces limitations in distinguishing glutamate from closely related metabolites like glutamine.

2. Positron Emission Tomography (PET)

PET imaging allows for the detection of glutamate receptor activity and downstream effects of excitotoxicity by using specialized radiotracers. For example, PET tracers such as [¹¹C]ABP688 and [¹⁸F]FPEB can bind to metabotropic glutamate receptors (mGluRs), helping to assess receptor density or alterations following injury. Additionally, PET can detect metabolic changes caused by excitotoxicity, such as altered glucose metabolism (using [¹⁸F]FDG) or increased neuroinflammation (using TSPO ligands). Although PET offers high sensitivity and functional insight, it involves exposure to radioactive tracers and is often used in combination with CT or MRI to provide anatomical context.

3. Functional Magnetic Resonance Imaging (fMRI)

While fMRI does not measure glutamate levels directly, it can detect changes in brain activity and blood oxygenation that result from excitotoxic damage. Regions affected by excitotoxicity often show disrupted functional connectivity and abnormal activation patterns, especially in tasks involving memory, attention, or motor control. These disruptions can be mapped using blood-oxygen-level-dependent (BOLD) fMRI, helping researchers infer areas of functional impairment related to excessive glutamate signaling. However, fMRI is more useful in research settings to understand the consequences of excitotoxicity rather than for direct diagnosis.

4. Other Emerging Technologies

Emerging imaging modalities and biosensors are being developed to detect glutamate excitotoxicity more precisely. Two-photon microscopy, while limited to animal studies, allows real-time imaging of glutamate release and receptor activity at the cellular level. Similarly, optogenetic sensors and fluorescent glutamate indicators such as iGluSnFR can visualize glutamate dynamics in preclinical models. In clinical settings, researchers are also exploring ultra-high field MRI (7T and above) to enhance the resolution of MRS and detect subtle metabolic changes linked to excitotoxicity.

Summary

Although no single machine can capture glutamate excitotoxicity in its entirety, a combination of neuroimaging techniques—particularly magnetic resonance spectroscopy and PET—offers valuable insights into the biochemical and functional changes associated with this process. These tools not only help in diagnosing and monitoring TBI-related brain damage but also serve as essential platforms for evaluating the efficacy of treatments aimed at reducing excitotoxic injury. I hope you guys learned something exciting this week, take care, and I’ll see you guys on Monday from the comforts of London, UK to let you in on my next passion research. I’ll see you soon!